Based on the case study of ecological governance in Chongqing，it is found that the means of multi-subjects governance tend to be diversified，and cross-regional cooperation between governments is increasingly strengthened. The “River Chief System” and the Yangtze River subsidence zone management has achieved great results. It still needs to promote the law system for providing the legal guarantee for environmental protection in multi-subjects；Establishing a scientific ecological governance evaluation system to guide the governance actions of the government，enterprises and the public；and establishing ecological information Bigdata platform to realize the value goal of information sharing.